Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_4920Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (248 aa)    
Predicted Functional Partners:
PP_5133
Homologs of previously reported genes of unknown function.
  
     0.762
PP_5134
Homologs of previously reported genes of unknown function.
  
     0.656
PP_1417
Putative Tricarboxylate transport protein TctB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.647
lpxOA
Fe(2+)/alpha-ketoglutarate-dependent dioxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Cell envelope.
  
     0.610
envZ
Osmolarity sensor protein EnvZ.
  
     0.609
PP_4570
Homologs of previously reported genes of unknown function.
  
     0.586
PP_0347
Homologs of previously reported genes of unknown function.
  
     0.582
PP_5152
Homologs of previously reported genes of unknown function.
  
     0.542
PP_1369
Homologs of previously reported genes of unknown function.
  
     0.534
PP_2893
Homologs of previously reported genes of unknown function.
  
     0.523
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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