STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4951Drug resistance transporter, EmrB/QacA family; Belongs to the major facilitator superfamily. (475 aa)    
Predicted Functional Partners:
emrA
Multidrug efflux transport system - membrane fusion protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 
 0.753
PP_1976
HlyD family secretion protein.
 
 0.657
PP_2068
Putative Multidrug efflux MFS membrane fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.656
dbpA
ATP-dependent RNA helicase, specific for 23S rRNA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Transcription : RNA processing; Belongs to the DEAD box helicase family.
  
    0.647
PP_1272
Putative Multidrug efflux MFS membrane fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.645
PP_4950
Homologs of previously reported genes of unknown function.
  
    0.590
PP_4949
Putative peptidase, TldD/PmbA family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.587
yhiN
Putative oxidoreductase with FAD/NAD(P)-binding domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
       0.482
PP_3588
Multidrug resistance transporter, Bcr/CflA family.
  
   
 0.461
PP_4948
Acyl-CoA dehydrogenase family protein.
       0.451
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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