STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4970Putative Cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (155 aa)    
Predicted Functional Partners:
PP_2893
Homologs of previously reported genes of unknown function.
 
     0.590
PP_5133
Homologs of previously reported genes of unknown function.
  
    0.580
PP_4971
Putative Outer membrane-bound lytic murein transglycolase A; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
       0.550
lptE
Putative Lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
     0.530
PP_1643
Homologs of previously reported genes of unknown function.
 
     0.521
PP_4792
Homologs of previously reported genes of unknown function.
  
     0.478
PP_0103
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
  
 0.474
PP_0629
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.472
PP_5167
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.449
PP_4465
Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.434
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.