STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_4970Putative Cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (155 aa)    
Predicted Functional Partners:
ccmD
Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
      
 0.584
PP_2893
Homologs of previously reported genes of unknown function.
 
     0.583
ccmF
Holocytochrome c synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Electron transport.
      
 0.581
PP_5133
Homologs of previously reported genes of unknown function.
  
     0.579
pta
Phosphate acetyltransferase; Involved in acetate metabolism; In the N-terminal section; belongs to the CobB/CobQ family.
      
 0.572
PP_4971
Putative Outer membrane-bound lytic murein transglycolase A; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
       0.550
PP_1643
Homologs of previously reported genes of unknown function.
 
     0.537
lptE
Putative Lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
     0.530
PP_4972
Homologs of previously reported genes of unknown function.
 
    0.514
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
       0.488
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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