STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PP_4979Putative Periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (262 aa)    
Predicted Functional Partners:
PP_0521
Homologs of previously reported genes of unknown function.
  
     0.720
PP_1474
Homologs of previously reported genes of unknown function.
  
     0.620
PP_4200
Homologs of previously reported genes of unknown function.
  
    0.588
PP_4270
Homologs of previously reported genes of unknown function.
  
     0.471
PP_4978
Homologs of previously reported genes of unknown function.
       0.461
rhlE-II
ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
       0.435
PP_2599
Chemotaxis sensory transducer family protein.
 
  
 0.413
PP_0768
Response regulator/TPR domain protein.
  
 
   0.407
metF
5,10-methylenetetrahydrofolate reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Folic acid; Belongs to the methylenetetrahydrofolate reductase family.
       0.402
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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