STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yceJPutative cytochrome b561, iron-regulated; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier; Energymetabolism : Electron transport. (183 aa)    
Predicted Functional Partners:
yceI
Polyisoprene-binding protein, acidic stress response factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Transport and binding proteins.
 
  
 0.958
rpoH
RNA polymerase factor sigma-32; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
      
 0.590
PP_4983
Putative amine oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
  
    0.497
PP_0891
Homologs of previously reported genes of unknown function; Belongs to the UPF0312 family.
 
  
 0.451
PP_4103
Low-affinity inorganic phosphate transporter.
   
  
 0.440
pitB
Phosphate transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Phosphorus compounds.
      
 0.433
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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