Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_4986Channel protein, hemolysin III family. (205 aa)    
Predicted Functional Partners:
corC
Heat shock protein, Co2+ and Mg2+ efflux protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
  
   
 0.640
PP_4987
Putative Chemotaxis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.587
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.586
cvpA
Membrane protein required for colicin V production; Function of homologous gene experimentally demonstrated in an other organism; membrane component; Cell envelope.
      
 0.578
pilJ
Protein PilJ.
     
 0.578
pilH
Protein PilH.
     
 0.553
pilI
Protein PilI.
       0.549
pmbA
Regulatory protease; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinfate : Protein and peptide secretion and trafficking.
      
 0.521
PP_1450
Putative Activation/secretion protein, TPS family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.518
topB
DNA topoisomerase III; Function of homologous gene experimentally demonstrated in an other organism; enzyme; DNAmetabolism : DNA replication, recombination, and repair.
     
 0.498
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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