Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilHProtein PilH. (121 aa)    
Predicted Functional Partners:
pilJ
Protein PilJ.
 
 0.999
pilI
Protein PilI.
 
 
 0.995
PP_4987
Putative Chemotaxis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
  0.992
PP_4988
Signal transduction histidine kinase CheA/CheY-like receiver; Function of strongly homologous gene; enzyme; Signaltransduction : Two-component systems.
 
0.986
pilG
Protein PilG.
 
  
0.951
PP_2505
GAF domain/GGDEF domain protein.
 
 
 0.912
PP_4405
Sensory box protein.
 
 
 0.911
PP_1494
Response regulator/GGDEF domain protein.
 
   
0.910
PP_1155
YaiC/YhcK/ArdA family protein.
 
 
    0.902
PP_3348
GGDEF domain protein.
 
 
    0.902
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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