STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4994Homologs of previously reported genes of unknown function. (301 aa)    
Predicted Functional Partners:
PP_1898
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.947
PP_1899
ExbD/TolR family protein.
 
 
 0.945
exbD
TonB-gated outer membrane transporter - gating inner membrane protein; Function of homologous gene experimentally demonstrated in an other organism; membrane component; Transportandbindingproteins : Cations and iron carrying compounds.
  
 
 0.802
pilG
Protein PilG.
 
   
 0.800
gshB
Glutathione synthetase.
      0.797
PP_4819
Homologs of previously reported genes of unknown function.
  
    0.784
PP_4171
Homologs of previously reported genes of unknown function.
 
 
 0.782
PP_4987
Putative Chemotaxis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.773
fimV
Putative motility protein fimV; Function experimentally demonstrated in the studied genus; membrane component; Cellularprocesses : Chemotaxis and motility.
  
     0.767
PP_4988
Signal transduction histidine kinase CheA/CheY-like receiver; Function of strongly homologous gene; enzyme; Signaltransduction : Two-component systems.
 
   
 0.756
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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