Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phaBPoly(3-hydroxyalkanoate) depolymerase. (283 aa)    
Predicted Functional Partners:
phaA
Poly(3-hydroxyalkanoate) polymerase 1; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.995
phaC-II
Poly(3-hydroxyalkanoate) polymerase 2; Function of strongly homologous gene; enzyme.
 
  
 0.961
PP_4421
Putative aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.749
PP_2804
Hydrolase, alpha/beta fold family.
  
   
 0.730
parA
Probable chromosome partition protein; Function of homologous gene experimentally demonstrated in an other organism; putative factor; Biologicalprocesses : Replicate; To B.subtilis soj.
      
 0.713
PP_5006
Transcriptional regulator, TetR family.
 
    0.675
PP_0512
Hypothetical protein; No homology to any previously reported sequences; Unknown function.
      
 0.656
pcaD
3-oxoadipate enol-lactonase 2; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism).
  
     0.588
hslV
Peptidase component of the ATP-dependent HslVU protease; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
    0.559
rsmG
16S RNA methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
   
  
 0.538
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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