Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_5006Transcriptional regulator, TetR family. (204 aa)    
Predicted Functional Partners:
phaC-II
Poly(3-hydroxyalkanoate) polymerase 2; Function of strongly homologous gene; enzyme.
  
    0.771
PP_5007
Polyhydroxyalkanoate granule-associated protein GA2.
  
     0.752
PP_5008
Poly granule-associated protein.
  
     0.731
phaB
Poly(3-hydroxyalkanoate) depolymerase.
 
    0.675
PP_5010
Homologs of previously reported genes of unknown function.
  
     0.565
phaA
Poly(3-hydroxyalkanoate) polymerase 1; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.494
PP_2308
Putative Acyl-CoA thioesterase II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.432
calB
Coniferyl aldehyde dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the aldehyde dehydrogenase family.
  
   
 0.429
PP_3531
Homologs of previously reported genes of unknown function.
  
     0.420
PP_4165
Homologs of previously reported genes of unknown function.
  
     0.405
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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