Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_5042Homologs of previously reported genes of unknown function. (140 aa)    
Predicted Functional Partners:
PP_1642
Homologs of previously reported genes of unknown function.
      
 0.970
PP_2224
Homologs of previously reported genes of unknown function.
      
 0.970
PP_5322
Putative metal ion transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
      
 0.863
tadA
tRNA-specific adenosine deaminase monomer; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
      
 0.861
sbp-I
Sulfate ABC transporter; Function of homologous gene experimentally demonstrated in an other organism; carrier; Centralintermediarymetabolism : Sulfur metabolism.
      
 0.851
PP_5734
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
      
 0.765
cusF
Probable exported copper efflux protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Biologicalprocesses : Excrete.
      
 0.741
fbp
Fructose-1,6-bisphosphatase, class 1; Function of strongly homologous gene; enzyme; Energymetabolism : Glycolysis/gluconeogenesis.
  
    0.635
PP_5039
Homologs of previously reported genes of unknown function.
       0.630
glgP
Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
       0.515
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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