STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betT-ICholine transporter; Function experimentally demonstrated in the studied genus; transporter; Mobileandextrachromosomalelementfunctions : Transposon functions; Belongs to the BCCT transporter (TC 2.A.15) family. (667 aa)    
Predicted Functional Partners:
betI
Choline-responsive transcriptional repressor BetI; Repressor involved in choline regulation of the bet genes.
  
  
 0.800
PP_4524
Putative Sodium-solute symporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
   
  
 0.759
PP_4103
Low-affinity inorganic phosphate transporter.
   
  
 0.743
pitB
Phosphate transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Phosphorus compounds.
      
 0.688
PP_5669
ABC transporter related; Function of strongly homologous gene; transporter.
      
 0.647
betB
Betaine aldehyde dehydrogenase, NAD-dependent; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
 
  
 0.593
PP_5060
Homologs of previously reported genes of unknown function.
  
    0.547
glpD
Glycerol-3-phosphate dehydrogenase (aerobic); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Aerobic; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
      
 0.519
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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