STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
ynfLPutative DNA-binding transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatoryfunctions : DNA interactions; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
PP_3227
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.768
PP_2539
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.732
ynfM
Efflux transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 
     0.654
PP_1861
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.617
PP_0661
Putative Transcriptional regulator AmpR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the LysR transcriptional regulatory family.
  
     0.611
PP_2350
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.586
PP_5070
ParA family protein.
       0.579
PP_3513
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.538
PP_2534
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.506
PP_1688
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.490
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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