STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_5073Homologs of previously reported genes of unknown function. (135 aa)    
Predicted Functional Partners:
PP_5151
Homologs of previously reported genes of unknown function.
  
  
 0.800
PP_2345
Homologs of previously reported genes of unknown function.
  
    0.663
PP_2346
Homologs of previously reported genes of unknown function.
  
    0.663
PP_5152
Homologs of previously reported genes of unknown function.
  
  
 0.657
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
       0.603
yegH
Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Cell envelope.
  
  
 0.579
PP_0241
Transporter.
  
     0.527
nfrB
Bacteriophage N4 receptor, inner membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; phenotype; Unknown function.
  
    0.524
ycgM
Putative isomerase/hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
       0.488
ygaU
Regulator of murein cross-linking; Function of homologous gene experimentally demonstrated in an other organism; regulator; Unknown function.
   
  
 0.432
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.