STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilQType 4 pili biogenesis protein; Function of strongly homologous gene; structure; Cell envelope. (412 aa)    
Predicted Functional Partners:
pilN
Type IV pili biogenesis protein PilN.
 
 
 0.998
PP_5081
Type IV pili biogenesis protein.
  
 
 0.995
PP_5083
Putative Type IV pili biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.982
pilT
Twitching motility protein; Function experimentally demonstrated in the studied genus; cell process.
 
  
 0.969
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
 0.936
pilD
Leader peptidase/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.930
pilC
Type 4 fimbrial assembly protein PilC.
 
 
 
 0.915
pilE
Type IV pili biogenesis protein PilE.
 
   
 0.907
pilF
Type IV pili biogenesis protein PilF.
  
   
 0.877
pilA
Fimbrial protein; Belongs to the N-Me-Phe pilin family.
 
   
 0.863
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.