STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_5081Type IV pili biogenesis protein. (338 aa)    
Predicted Functional Partners:
pilN
Type IV pili biogenesis protein PilN.
  
 
 0.998
pilQ
Type 4 pili biogenesis protein; Function of strongly homologous gene; structure; Cell envelope.
  
 
 0.995
PP_5083
Putative Type IV pili biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.989
PP_3478
Putative Secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial secretin family.
  
 
 0.979
gspF
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
   
 
 0.973
gspE
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
 
 0.972
PP_5190
Type II secretion system protein.
  
 
 0.896
PP_3483
Putative Type II secretion system protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.895
pilC
Type 4 fimbrial assembly protein PilC.
   
 
 0.893
xcpS
Type II secretion pathway protein XcpS.
   
 
 0.893
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.