Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_5081Type IV pili biogenesis protein. (338 aa)    
Predicted Functional Partners:
pilN
Type IV pili biogenesis protein PilN.
  
 
 0.999
pilQ
Type 4 pili biogenesis protein; Function of strongly homologous gene; structure; Cell envelope.
  
 
 0.995
PP_3478
Putative Secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial secretin family.
  
 
 0.978
PP_5083
Putative Type IV pili biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.977
gspF
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
   
 
 0.919
gspE
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
 
 0.902
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.874
gspG
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
  
  
 0.815
PP_0609
Homologs of previously reported genes of unknown function.
  
  
 0.760
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
  
    0.753
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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