Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilNType IV pili biogenesis protein PilN. (178 aa)    
Predicted Functional Partners:
PP_5081
Type IV pili biogenesis protein.
  
 
 0.999
pilQ
Type 4 pili biogenesis protein; Function of strongly homologous gene; structure; Cell envelope.
 
 
 0.998
PP_5083
Putative Type IV pili biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.997
pilE
Type IV pili biogenesis protein PilE.
 
  
 0.937
pilF
Type IV pili biogenesis protein PilF.
  
  
 0.909
pilD
Leader peptidase/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.881
pilC
Type 4 fimbrial assembly protein PilC.
   
 
 0.877
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.869
fimV
Putative motility protein fimV; Function experimentally demonstrated in the studied genus; membrane component; Cellularprocesses : Chemotaxis and motility.
  
  
 0.856
pilJ
Protein PilJ.
  
  
 0.852
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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