STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_5083Putative Type IV pili biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (293 aa)    
Predicted Functional Partners:
pilN
Type IV pili biogenesis protein PilN.
 
 
 0.997
PP_5081
Type IV pili biogenesis protein.
  
 
 0.989
pilQ
Type 4 pili biogenesis protein; Function of strongly homologous gene; structure; Cell envelope.
 
 
 0.981
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.807
pilD
Leader peptidase/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.783
pilA
Fimbrial protein; Belongs to the N-Me-Phe pilin family.
 
   
 0.774
pilC
Type 4 fimbrial assembly protein PilC.
 
 
 
 0.760
pilF
Type IV pili biogenesis protein PilF.
  
  
 0.748
pilT
Twitching motility protein; Function experimentally demonstrated in the studied genus; cell process.
 
  
 0.742
PP_3478
Putative Secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial secretin family.
 
 
 0.739
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.