Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_5083Putative Type IV pili biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (293 aa)    
Predicted Functional Partners:
pilN
Type IV pili biogenesis protein PilN.
 
 
 0.997
pilQ
Type 4 pili biogenesis protein; Function of strongly homologous gene; structure; Cell envelope.
 
 
 0.982
PP_5081
Type IV pili biogenesis protein.
  
 
 0.977
mrcA
Penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase; Function of strongly homologous gene; enzyme; Cellenvelope : Biosynthesis and degradation of murein sacculus and peptidoglycan.
 
   
 0.904
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
     
 0.897
PP_5242
Sensor histidine kinase/GAF domain protein.
  
   
 0.888
PP_0526
Transposase.
      
 0.820
PP_5050
Transposase.
      
 0.820
pilA
Fimbrial protein; Belongs to the N-Me-Phe pilin family.
 
   
 0.765
pilC
Type 4 fimbrial assembly protein PilC.
 
 
 
 0.758
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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