STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilTTwitching motility protein; Function experimentally demonstrated in the studied genus; cell process. (336 aa)    
Predicted Functional Partners:
pilD
Leader peptidase/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.969
pilQ
Type 4 pili biogenesis protein; Function of strongly homologous gene; structure; Cell envelope.
 
  
 0.969
pilC
Type 4 fimbrial assembly protein PilC.
 
  
 0.967
pilF
Type IV pili biogenesis protein PilF.
 
   
 0.901
pilE
Type IV pili biogenesis protein PilE.
 
   
 0.853
pilN
Type IV pili biogenesis protein PilN.
  
  
 0.841
gspF
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
 
  
 0.827
xcpS
Type II secretion pathway protein XcpS.
 
  
 0.827
pilH
Protein PilH.
  
  
 0.824
PP_5094
Putative enzyme with PLP binding domain; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
     
 0.766
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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