STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_5119Transcriptional regulator, TetR family. (221 aa)    
Predicted Functional Partners:
PP_1615
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
 
 
 0.864
calB
Coniferyl aldehyde dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the aldehyde dehydrogenase family.
 
  
 0.845
PP_5122
Oxidoreductase, GMC family.
 
  
 0.826
PP_2695
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
    
 
 0.793
PP_5121
Homologs of previously reported genes of unknown function.
 
     0.766
PP_5007
Polyhydroxyalkanoate granule-associated protein GA2.
  
     0.727
PP_5008
Poly granule-associated protein.
  
     0.721
sseA
Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.708
PP_4165
Homologs of previously reported genes of unknown function.
  
    0.555
PP_1497
Transcriptional regulator, TetR family.
  
    0.508
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.