STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_5121Homologs of previously reported genes of unknown function. (161 aa)    
Predicted Functional Partners:
PP_5122
Oxidoreductase, GMC family.
 
    0.935
calB
Coniferyl aldehyde dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the aldehyde dehydrogenase family.
 
    0.835
PP_5119
Transcriptional regulator, TetR family.
 
     0.766
PP_2083
Putative Lipase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.677
PP_3531
Homologs of previously reported genes of unknown function.
  
     0.601
PP_4277
Transcriptional regulator, GntR family.
  
    0.597
PP_1357
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.568
PP_2004
Transcriptional regulator, AraC family.
  
    0.535
PP_4168
Homologs of previously reported genes of unknown function.
  
    0.495
PP_1497
Transcriptional regulator, TetR family.
  
     0.490
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.