Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_5140Transcriptional regulator, MerR family. (147 aa)    
Predicted Functional Partners:
czcC
Metal RND efflux outer membrane protein, CzcC family; Function experimentally demonstrated in the studied genus; factor; Biologicalprocesses : Excrete.
 
   
 0.879
czcR-II
Response regulator; Function experimentally demonstrated in the studied genus; regulator; Biologicalprocesses : Control.
    
 
 0.866
czcR-III
Response regulator; Function of strongly homologous gene; regulator; Biologicalprocesses : Control.
    
 
 0.866
cadA-III
Cadmium translocating P-type ATPase; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
 
  
 0.845
czcR-I
Two component heavy metal response regulator; Function of strongly homologous gene; regulator; Biologicalprocesses : Control.
    
 
 0.830
PP_5138
Putative transcriptional regulator LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Biologicalprocesses : Control; Belongs to the LysR transcriptional regulatory family.
     
 0.555
PP_4273
Transcriptional regulator, MerR family.
  
 
 0.468
PP_3262
Putative Metallothionein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.465
PP_3539
Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.456
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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