STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_5154Putative Oxidoreductase, FAD-binding; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (455 aa)    
Predicted Functional Partners:
PP_1832
Putative Oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.883
copA-II
Copper resistance protein A; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
   
  
 0.868
ycgM
Putative isomerase/hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
  
  
 0.835
PP_1644
NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family.
     
 0.820
serA
D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase; Function experimentally demonstrated in the studied species; enzyme; Aminoacidbiosynthesis : Serine family; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.790
PP_3248
Dyp-type peroxidase family protein.
      
 0.767
PP_5151
Homologs of previously reported genes of unknown function.
       0.632
cumA
Multicopper oxidase; Function experimentally demonstrated in the studied species; enzyme.
  
   
 0.621
etfA
Electron transfer flavoprotein subunit alpha.
 
 
 0.597
PP_5152
Homologs of previously reported genes of unknown function.
       0.575
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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