STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_5167Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (193 aa)    
Predicted Functional Partners:
PP_5166
Sigma-54 dependent transcriptional regulator.
  
    0.650
PP_4849
Putative DnaK protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.541
cysU
Sulfate ABC transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
    0.541
cysW
Sulfate ABC transporter, inner membrane subunit CysW; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
    0.527
cysA
Sulfate/thiosulfate import ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
       0.525
vgrG-III
Type 6 secretion system protein; Function of strongly homologous gene; regulator.
   
    0.461
PP_4970
Putative Cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.449
PP_5172
Hypothetical protein; No homology to any previously reported sequences.
  
    0.420
plpB
NLPA lipoprotein.
  
    0.407
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.