Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_5172Hypothetical protein; No homology to any previously reported sequences. (60 aa)    
Predicted Functional Partners:
sbp-II
Sulfate ABC transporter; Function of homologous gene experimentally demonstrated in an other organism; carrier; Centralintermediarymetabolism : Sulfur metabolism.
  
  
 0.857
cysNC
Sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.801
cysD
Sulfate adenylyltransferase subunit 2.
  
    0.799
cysU
Sulfate ABC transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
    0.789
PP_0235
Peroxidase.
   
    0.786
cysW
Sulfate ABC transporter, inner membrane subunit CysW; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
    0.770
cysA
Sulfate/thiosulfate import ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
  
  
 0.746
PP_5167
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.636
sbp-I
Sulfate ABC transporter; Function of homologous gene experimentally demonstrated in an other organism; carrier; Centralintermediarymetabolism : Sulfur metabolism.
  
  
 0.560
PP_5174
Efflux membrane fusion protein, RND family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.445
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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