STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_5175HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (362 aa)    
Predicted Functional Partners:
PP_5173
RND efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.977
PP_1517
RND efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.904
PP_3302
RND efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.893
pvdT
Pyoverdine efflux carrier and ATP binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.869
PP_5174
Efflux membrane fusion protein, RND family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
0.858
mexF
Multidrug efflux RND transporter MexF.
 
 
 0.707
mexB
Multidrug resistance protein MexB.
 
 
 0.704
mexD
Multidrug efflux RND transporter MexD.
 
 
 0.703
ttgB
Probable efflux pump membrane transporter TtgB; Probable membrane transporter component of the TtgABC efflux pump with unknown specificity; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.636
PP_0906
Putative Multidrug efflux RND transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.605
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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