STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_5390Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (91 aa)    
Predicted Functional Partners:
PP_5389
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.961
PP_5391
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.753
PP_5392
Conserved hypothetical protein containing WD40/YVTN repeat domain; Homologs of previously reported genes of unknown function; Unknown function.
  
    0.716
PP_2157
Sensor histidine kinase; Member of a two-component regulatory system.
  
     0.607
copS
Copper sensor protein; Member of a two-component regulatory system.
 
     0.542
copB-II
Copper resistance protein B; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
 
   
 0.533
copB-I
Copper resistance protein B; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
 
   
 0.510
tnpT-I
Putative cointegrate resolution protein T Tn4652; Function experimentally demonstrated in the studied strain; enzyme; Mobileandextrachromosomalelementfunctions : Transposon functions.
  
     0.477
copA-II
Copper resistance protein A; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
 
    0.464
PP_5126
Conserved protein of unknown function containing an HDOD domain; Homologs of previously reported genes of unknown function; Unknown function.
  
  
 0.451
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.