STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_5567Protein of unknown function; No homology to any previously reported sequences; Unknown function. (63 aa)    
Predicted Functional Partners:
PP_3088
Homologs of previously reported genes of unknown function.
  
  
 0.577
PP_5568
Homologs of previously reported genes of unknown function.
       0.471
PP_2624
Homologs of previously reported genes of unknown function.
  
  
 0.420
PP_3100
Homologs of previously reported genes of unknown function.
  
  
 0.420
PP_4074
Homologs of previously reported genes of unknown function.
  
  
 0.420
PP_3089
Homologs of previously reported genes of unknown function.
  
  
 0.414
PP_5569
Protein of unknown function of phage origin; No homology to any previously reported sequences; Mobileandextrachromosomalelementfunctions : Prophage functions.
       0.412
PP_2091
Putative Serine/threonine-protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.408
PP_2620
Homologs of previously reported genes of unknown function.
  
  
 0.405
PP_3096
Homologs of previously reported genes of unknown function.
  
  
 0.405
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.