STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4629Sensory box protein. (142 aa)    
Predicted Functional Partners:
PP_3758
Response regulator/sensor histidine kinase.
    
 0.901
PP_3672
Homologs of previously reported genes of unknown function.
 
    
 0.898
PP_3581
Homologs of previously reported genes of unknown function.
 
      0.883
PP_5263
GGDEF domain protein.
 
      0.881
PP_2557
Sensory box protein.
    
 0.880
PP_4173
Sensor histidine kinase/response regulator.
 
    
 0.842
hinT
Aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Maintain.
      
 0.835
PP_1144
Homologs of previously reported genes of unknown function.
 
      0.834
PP_1875
Sensor histidine kinase/response regulator.
 
    
 0.812
TpbB
Diguanylate cyclase; Function experimentally demonstrated in the studied genus; enzyme; Regulatory functions.
 
 
  
 0.806
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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