STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0010Biopolymer transport ExbB protein; Similar to SP|O34260 (percent identity: 81 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (254 aa)    
Predicted Functional Partners:
XF_0011
Biopolymer transport ExbD1 protein; Similar to SP|O34259 (percent identity: 78 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.981
XF_0012
Biopolymer transport ExbD2 protein; Similar to SP|O34258 (percent identity: 82 %/query alignment coverage: 98.5 %/subject alignment coverage: 98.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.975
XF_0009
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.945
tolR
TolR protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.945
XF_1080
Conserved hypothetical protein; Similar to GI|5531414 (percent identity: 36 %/query alignment coverage: 90.3 %/subject alignment coverage: 92.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 45.
 
 
 0.911
XF_2287
TonB protein; Similar to SP|O34261 (percent identity: 29 %/query alignment coverage: 92.6 %/subject alignment coverage: 96.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.769
XF_1957
TonB protein; Similar to GI|3978235 (percent identity: 26 %/query alignment coverage: 67.6 %/subject alignment coverage: 78.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.730
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.696
pal
Outer membrane protein P6 precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.691
XF_2605
TonB protein; Similar to SP|O34261 (percent identity: 36 %/query alignment coverage: 69.3 %/subject alignment coverage: 42.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.649
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.