STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0106Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (460 aa)    
Predicted Functional Partners:
XF_2714
alpha-L-fucosidase; Similar to SP|P04066 (percent identity: 36 %/query alignment coverage: 54.4 %/subject alignment coverage: 54.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 
0.929
XF_0840
Beta-galactosidase; Similar to SP|P48982 (percent identity: 71 %/query alignment coverage: 93.8 %/subject alignment coverage: 96.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.879
XF_0842
Conserved hypothetical protein; Similar to GI|6522844 (percent identity: 32 %/query alignment coverage: 102.2 %/subject alignment coverage: 104.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.826
XF_0847
Beta-hexosaminidase precursor; Similar to SP|P49008 (percent identity: 37 %/query alignment coverage: 70.9 %/subject alignment coverage: 76.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 24.
 
  
 0.784
XF_0843
Conserved hypothetical protein; Similar to SP|Q10449 (percent identity: 41 %/query alignment coverage: 89.3 %/subject alignment coverage: 90.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.768
cutC
Copper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
   
 0.715
XF_0846
Beta-mannosidase precursor; Similar to GI|4982197 (percent identity: 35 %/query alignment coverage: 78.0 %/subject alignment coverage: 88.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 117.
 
   
 0.576
XF_2234
Low molecular weight heat shock protein; Similar to SP|Q06823 (percent identity: 38 %/query alignment coverage: 67.5 %/subject alignment coverage: 57.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the small heat shock protein (HSP20) family.
      
 0.502
XF_0845
Family 3 glycoside hydrolase; Similar to GI|5690010 (percent identity: 45 %/query alignment coverage: 46.6 %/subject alignment coverage: 59.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.462
rpsP
30S ribosomal protein S16; Similar to SP|P44382 (percent identity: 65 %/query alignment coverage: 93.0 %/subject alignment coverage: 97.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the bacterial ribosomal protein bS16 family.
       0.436
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.