STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0136DNA polymerase III holoenzyme chi subunit; Similar to GI|2984772 (percent identity: 34 %/query alignment coverage: 101.4 %/subject alignment coverage: 100.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (141 aa)    
Predicted Functional Partners:
XF_0676
DNA polymerase III, delta subunit; Similar to SP|P52024 (percent identity: 35 %/query alignment coverage: 74.2 %/subject alignment coverage: 75.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.994
dnaE
DNA polymerase III, alpha chain; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity); Belongs to the DNA polymerase type-C family. DnaE subfamily.
    
 0.993
dnaX
DNA polymerase III subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
    
 0.993
XF_2178
DNA polymerase III, delta subunit; Similar to SP|P28630 (percent identity: 29 %/query alignment coverage: 96.2 %/subject alignment coverage: 96.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.993
XF_0002
DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...]
  
 
 0.973
dnaQ
DNA polymerase III, epsilon chain; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
   
 0.931
pepA
Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
    0.880
XF_1558
Single-stranded DNA binding protein; Similar to SP|P40947 (percent identity: 36 %/query alignment coverage: 120.3 %/subject alignment coverage: 57.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
   0.793
XF_0140
Conserved hypothetical protein; Similar to SP|P39341 (percent identity: 30 %/query alignment coverage: 98.6 %/subject alignment coverage: 100.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 96.
 
     0.782
XF_0137
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.