STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glmSGlucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. (609 aa)    
Predicted Functional Partners:
XF_2710
Glutamate synthase, alpha subunit; Similar to SP|P09831 (percent identity: 53 %/query alignment coverage: 99.7 %/subject alignment coverage: 97.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -117.
   
 0.967
glmM
Phosphomannomutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
 
 0.950
XF_1464
Glucosamine--fructose-6-phosphate aminotransferase; Similar to GI|6460504 (percent identity: 47 %/query alignment coverage: 100.9 %/subject alignment coverage: 96.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
0.947
XF_1842
Glutamine synthetase; Similar to SP|P06711 (percent identity: 64 %/query alignment coverage: 92.9 %/subject alignment coverage: 99.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.946
carB
Carbamoyl-phosphate synthase large chain; Similar to SP|P00968 (percent identity: 68 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 0.937
XF_1465
N-acetylglucosamine-6-phosphate deacetylase; Similar to SP|P15300 (percent identity: 39 %/query alignment coverage: 96.6 %/subject alignment coverage: 97.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 0.933
pgi
Glucose-6-phosphate isomerase; Similar to GI|2996048 (percent identity: 79 %/query alignment coverage: 99.6 %/subject alignment coverage: 89.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.929
XF_0259
Phosphomannose isomerase-GDP-mannose pyrophosphorylase; Similar to SP|P29956 (percent identity: 84 %/query alignment coverage: 96.9 %/subject alignment coverage: 100.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.922
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
    
0.915
XF_2709
Glutamate synthase, beta subunit; Similar to SP|P09832 (percent identity: 55 %/query alignment coverage: 97.4 %/subject alignment coverage: 101.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 0.913
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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