STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0146Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (252 aa)    
Predicted Functional Partners:
ftsA
Cell division protein; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
   
 
 0.873
argS
arginyl-tRNA synthetase; Similar to SP|P46906 (percent identity: 40 %/query alignment coverage: 97.4 %/subject alignment coverage: 102.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.853
ftsQ
Cell division protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.
 
 
 
 0.834
XF_0884
Penicillin binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
    
 
 0.769
ftsW
Cell division protein; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.
   
 
 0.760
ftsI
Penicillin binding protein 3; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
  
 
 0.758
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
    
 
 0.688
XF_2647
Conserved hypothetical protein; Similar to SP|P42810 (percent identity: 30 %/query alignment coverage: 95.5 %/subject alignment coverage: 92.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 99.
  
     0.631
lolB
Outer membrane lipoprotein precursor; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
  
 0.603
XF_0148
DNA repair protein; Similar to SP|P25531 (percent identity: 41 %/query alignment coverage: 91.8 %/subject alignment coverage: 95.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the UPF0758 family.
       0.594
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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