Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
prfCPeptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (548 aa)    
Predicted Functional Partners:
rpmA
50S ribosomal protein L27; Similar to SP|P02427 (percent identity: 64 %/query alignment coverage: 96.5 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.854
rpmG
50S ribosomal protein L33; Similar to SP|P44369 (percent identity: 73 %/query alignment coverage: 96.3 %/subject alignment coverage: 92.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.803
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.799
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
   
 
 0.794
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.786
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
 
 0.779
rpmF
50S ribosomal protein L32; Similar to GI|6045044 (percent identity: 75 %/query alignment coverage: 84.4 %/subject alignment coverage: 96.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.772
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
   
   0.770
rplQ
50S ribosomal protein L17; Similar to GI|4098578 (percent identity: 80 %/query alignment coverage: 100.0 %/subject alignment coverage: 99.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
   0.769
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.759
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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