STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0197Conserved hypothetical protein; Similar to GI|6460343 (percent identity: 35 %/query alignment coverage: 75.9 %/subject alignment coverage: 83.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (220 aa)    
Predicted Functional Partners:
XF_1891
Di-tripeptide ABC transporter membrane protein; Similar to SP|P94408 (percent identity: 35 %/query alignment coverage: 96.7 %/subject alignment coverage: 100.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.462
plsB
Glycerol-3-phosphate acyltransferase; Similar to SP|P44857 (percent identity: 37 %/query alignment coverage: 90.9 %/subject alignment coverage: 97.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the GPAT/DAPAT family.
 
  
 0.457
XF_2310
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; Similar to SP|P45419 (percent identity: 49 %/query alignment coverage: 96.7 %/subject alignment coverage: 104.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.433
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
   
    0.422
XF_0397
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.417
XF_0198
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.416
XF_2331
Dihydrofolate reductase type III; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
  
  
 0.405
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 
 0.402
hisB
Imidazoleglycerolphosphate dehydratase/histidinol-phosphate phosphatase bifunctional enzyme; Similar to SP|P06987 (percent identity: 50 %/query alignment coverage: 99.2 %/subject alignment coverage: 104.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; In the N-terminal section; belongs to the histidinol- phosphatase family.
  
  
 0.401
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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