Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0214Conserved hypothetical protein; Similar to GI|987638 (percent identity: 27 %/query alignment coverage: 87.9 %/subject alignment coverage: 103.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (240 aa)    
Predicted Functional Partners:
hisI
phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase bifunctional enzyme; Similar to SP|O24714 (percent identity: 56 %/query alignment coverage: 93.7 %/subject alignment coverage: 97.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; In the C-terminal section; belongs to the PRA-PH family.
  
  
 0.973
XF_2310
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; Similar to SP|P45419 (percent identity: 49 %/query alignment coverage: 96.7 %/subject alignment coverage: 104.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
 0.908
XF_1209
Cardiolipin synthase; Similar to SP|P31071 (percent identity: 34 %/query alignment coverage: 100.0 %/subject alignment coverage: 96.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
     
 0.901
trpC
Indole-3-glycerol phosphate synthase; Similar to SP|P20577 (percent identity: 63 %/query alignment coverage: 99.2 %/subject alignment coverage: 94.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the TrpC family.
       0.835
hisB
Imidazoleglycerolphosphate dehydratase/histidinol-phosphate phosphatase bifunctional enzyme; Similar to SP|P06987 (percent identity: 50 %/query alignment coverage: 99.2 %/subject alignment coverage: 104.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; In the N-terminal section; belongs to the histidinol- phosphatase family.
  
  
 0.806
hisF
Cyclase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit (By similarity).
  
  
 0.773
XF_0201
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.754
XF_0291
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.742
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
  
     0.735
XF_2338
Chorismate mutase; Similar to GI|2622768 (percent identity: 29 %/query alignment coverage: 69.7 %/subject alignment coverage: 57.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.734
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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