STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0243Acriflavin resistance protein; Similar to GI|2632985 (percent identity: 23 %/query alignment coverage: 102.7 %/subject alignment coverage: 99.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1027 aa)    
Predicted Functional Partners:
XF_0244
Membrane fusion protein; Similar to GI|1399757 (percent identity: 25 %/query alignment coverage: 100.0 %/subject alignment coverage: 95.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.970
XF_2084
Component of multidrug efflux system; Similar to GI|1707644 (percent identity: 28 %/query alignment coverage: 97.3 %/subject alignment coverage: 86.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 72; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.872
XF_2384
Membrane fusion protein precursor; Similar to GI|1736780 (percent identity: 37 %/query alignment coverage: 94.6 %/subject alignment coverage: 85.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.781
XF_2093
Precursor of drug resistance protein; Similar to SP|P31223 (percent identity: 42 %/query alignment coverage: 90.4 %/subject alignment coverage: 92.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.673
XF_0245
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.613
XF_0246
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.600
XF_0247
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.509
XF_2586
Outer membrane export factor; Similar to SP|P02930 (percent identity: 33 %/query alignment coverage: 98.0 %/subject alignment coverage: 89.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.496
yajC
Preprotein translocase YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.
  
 
 
 0.476
XF_2085
Transcriptional regulator (AcrR family); Similar to GI|5441765 (percent identity: 23 %/query alignment coverage: 95.1 %/subject alignment coverage: 77.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.412
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.