STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0253Electron transfer flavoprotein alpha subunit; Similar to SP|P38974 (percent identity: 51 %/query alignment coverage: 98.1 %/subject alignment coverage: 100.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (316 aa)    
Predicted Functional Partners:
XF_0254
Electron transfer flavoprotein beta subunit; Similar to SP|P53575 (percent identity: 54 %/query alignment coverage: 99.6 %/subject alignment coverage: 99.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 0.999
XF_1298
Electron transfer flavoprotein ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
 
 0.999
XF_0868
Dihydrolipoamide dehydrogenase; Similar to GI|1073212 (percent identity: 57 %/query alignment coverage: 100.2 %/subject alignment coverage: 101.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 
 0.778
XF_2205
Conserved hypothetical protein; Similar to GI|6320023 (percent identity: 34 %/query alignment coverage: 100.0 %/subject alignment coverage: 85.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.730
XF_0347
D-lactate dehydrogenase; Similar to GI|2984066 (percent identity: 38 %/query alignment coverage: 99.8 %/subject alignment coverage: 95.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.702
XF_1115
Regulator of pathogenicity factors; Similar to GI|1922922 (percent identity: 67 %/query alignment coverage: 96.6 %/subject alignment coverage: 96.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.615
sucD
succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
   
  
 0.587
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
  
 0.583
atpG
ATP synthase, gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
  
   0.559
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
    0.529
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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