Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0280Leucine aminopeptidase; Similar to GI|2984306 (percent identity: 34 %/query alignment coverage: 73.6 %/subject alignment coverage: 72.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the peptidase M17 family. (484 aa)    
Predicted Functional Partners:
gshB
Glutathione synthetase; Similar to SP|P04425 (percent identity: 53 %/query alignment coverage: 97.1 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 
 0.926
pepA
Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
  
 
0.921
XF_0984
Gamma-glutamyltranspeptidase; Similar to SP|P36267 (percent identity: 39 %/query alignment coverage: 95.0 %/subject alignment coverage: 99.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -117.
     
 0.918
XF_1428
Glutamate-cysteine ligase precursor; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
     
  0.900
XF_0128
Cysteine synthase; Similar to SP|P55708 (percent identity: 27 %/query alignment coverage: 87.9 %/subject alignment coverage: 102.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
  0.807
XF_0831
Cysteine synthase; Similar to SP|P37887 (percent identity: 51 %/query alignment coverage: 91.0 %/subject alignment coverage: 98.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
  0.807
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
 
 0.806
XF_0281
Transport protein; Similar to GI|2635675 (percent identity: 24 %/query alignment coverage: 85.6 %/subject alignment coverage: 90.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.758
XF_0282
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.729
XF_0283
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.675
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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