STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0290Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (908 aa)    
Predicted Functional Partners:
XF_1535
Citrate synthase; Similar to SP|P14165 (percent identity: 61 %/query alignment coverage: 99.1 %/subject alignment coverage: 99.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the citrate synthase family.
 
 0.993
XF_2700
Isocitrate dehydrogenase; Similar to SP|P16100 (percent identity: 75 %/query alignment coverage: 96.8 %/subject alignment coverage: 99.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the monomeric-type IDH family.
  
 
 0.934
XF_0292
Aconitate hydratase 2; Similar to SP|P36683 (percent identity: 72 %/query alignment coverage: 97.4 %/subject alignment coverage: 99.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the aconitase/IPM isomerase family.
    
 0.933
XF_2596
Isocitrate dehydrogenase; Similar to SP|P33197 (percent identity: 49 %/query alignment coverage: 100.3 %/subject alignment coverage: 67.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.930
XF_1115
Regulator of pathogenicity factors; Similar to GI|1922922 (percent identity: 67 %/query alignment coverage: 96.6 %/subject alignment coverage: 96.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 
 0.923
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.810
XF_1073
Succinate dehydrogenase iron-sulfur protein; Similar to SP|Q59662 (percent identity: 70 %/query alignment coverage: 99.2 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.778
rpmB
50S ribosomal protein L28; Similar to SP|P44364 (percent identity: 71 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 12; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.778
XF_1243
Conserved hypothetical protein; Similar to SP|O07931 (percent identity: 37 %/query alignment coverage: 91.1 %/subject alignment coverage: 102.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.778
rpmF
50S ribosomal protein L32; Similar to GI|6045044 (percent identity: 75 %/query alignment coverage: 84.4 %/subject alignment coverage: 96.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.772
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.