STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0301Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (100 aa)    
Predicted Functional Partners:
XF_0302
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     0.981
XF_0300
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
  0.944
XF_2586
Outer membrane export factor; Similar to SP|P02930 (percent identity: 33 %/query alignment coverage: 98.0 %/subject alignment coverage: 89.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.831
XF_2384
Membrane fusion protein precursor; Similar to GI|1736780 (percent identity: 37 %/query alignment coverage: 94.6 %/subject alignment coverage: 85.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.594
XF_2397
Toxin secretion ABC transporter ATP-binding protein; Similar to SP|P10089 (percent identity: 61 %/query alignment coverage: 96.9 %/subject alignment coverage: 98.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 21.
 
 
 0.572
XF_0244
Membrane fusion protein; Similar to GI|1399757 (percent identity: 25 %/query alignment coverage: 100.0 %/subject alignment coverage: 95.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
  0.540
XF_2084
Component of multidrug efflux system; Similar to GI|1707644 (percent identity: 28 %/query alignment coverage: 97.3 %/subject alignment coverage: 86.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 72; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
  0.540
XF_1220
Colicin V secretion ABC transporter ATP-binding protein; Similar to SP|P22520 (percent identity: 40 %/query alignment coverage: 95.5 %/subject alignment coverage: 96.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.465
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
   
   0.430
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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