STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0322Two-component system, regulatory protein; Similar to SP|P22104 (percent identity: 45 %/query alignment coverage: 94.8 %/subject alignment coverage: 97.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -57. (231 aa)    
Predicted Functional Partners:
XF_0323
Two-component system, sensor protein; Similar to GI|2961075 (percent identity: 31 %/query alignment coverage: 86.7 %/subject alignment coverage: 90.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.996
XF_0853
Two-component system, sensor protein; Similar to GI|2765035 (percent identity: 37 %/query alignment coverage: 75.8 %/subject alignment coverage: 50.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.903
XF_0397
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.886
XF_2535
Two-component system, sensor protein; Similar to GI|1729784 (percent identity: 34 %/query alignment coverage: 83.9 %/subject alignment coverage: 73.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 216.
 
 
 0.799
XF_1114
Regulator of pathogenicity factors; Similar to SP|P49246 (percent identity: 59 %/query alignment coverage: 99.7 %/subject alignment coverage: 97.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 252.
 
 
 0.755
XF_1330
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
0.754
XF_2592
Two-component system, sensor protein; Similar to SP|P45608 (percent identity: 38 %/query alignment coverage: 94.8 %/subject alignment coverage: 98.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.754
XF_1455
Two-component system, hybrid sensor/regulatory protein; Similar to GI|6458916 (percent identity: 28 %/query alignment coverage: 77.9 %/subject alignment coverage: 101.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.735
XF_0390
Two-component system, sensor protein; Similar to SP|P23837 (percent identity: 36 %/query alignment coverage: 61.0 %/subject alignment coverage: 60.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.693
XF_0324
Periplasmic iron-binding protein; Similar to GI|3776222 (percent identity: 24 %/query alignment coverage: 87.3 %/subject alignment coverage: 86.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 81.
 
     0.684
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.