Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0372Fimbrial assembly protein; Similar to GI|530859 (percent identity: 38 %/query alignment coverage: 98.3 %/subject alignment coverage: 99.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (176 aa)    
Predicted Functional Partners:
XF_0373
Fimbrial assembly protein; Similar to SP|P34750 (percent identity: 34 %/query alignment coverage: 92.5 %/subject alignment coverage: 82.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 39.
 
 
 0.995
XF_0371
Fimbrial assembly membrane protein; Similar to GI|455331 (percent identity: 43 %/query alignment coverage: 87.8 %/subject alignment coverage: 94.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 3.
 
  
 0.994
XF_0370
Fimbrial assembly membrane protein; Similar to GI|530857 (percent identity: 44 %/query alignment coverage: 76.4 %/subject alignment coverage: 84.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.992
XF_0369
Fimbrial assembly membrane protein; Similar to GI|895925 (percent identity: 61 %/query alignment coverage: 89.5 %/subject alignment coverage: 99.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -15.
 
  
 0.979
XF_0479
Type IV pilin; Similar to GI|3002996 (percent identity: 35 %/query alignment coverage: 103.2 %/subject alignment coverage: 86.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.825
XF_0033
PilE protein; Similar to GI|2120639 (percent identity: 37 %/query alignment coverage: 98.6 %/subject alignment coverage: 97.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.823
XF_0677
Type 4 fimbriae assembly protein; Similar to GI|972779 (percent identity: 62 %/query alignment coverage: 94.1 %/subject alignment coverage: 94.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.818
XF_0032
PilY1 gene product; Similar to GI|1246302 (percent identity: 32 %/query alignment coverage: 51.7 %/subject alignment coverage: 54.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.790
XF_1224
PilY1 gene product; Similar to GI|1246302 (percent identity: 30 %/query alignment coverage: 59.0 %/subject alignment coverage: 61.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.790
XF_0473
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.784
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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