STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0404Conserved hypothetical protein; Similar to GI|2688141 (percent identity: 25 %/query alignment coverage: 65.6 %/subject alignment coverage: 54.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (154 aa)    
Predicted Functional Partners:
XF_0403
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.962
XF_0402
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
erpA
Conserved hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG.
       0.684
XF_1954
Pilus biogenesis protein; Similar to SP|P43502 (percent identity: 33 %/query alignment coverage: 97.7 %/subject alignment coverage: 96.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.550
XF_0805
Conserved hypothetical protein; Similar to GI|6715619 (percent identity: 45 %/query alignment coverage: 88.4 %/subject alignment coverage: 91.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.520
coq7
Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
 
     0.479
XF_1950
Conserved hypothetical protein; Similar to GI|3241971 (percent identity: 29 %/query alignment coverage: 92.3 %/subject alignment coverage: 85.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.451
XF_2441
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.444
XF_1625
Two-component system, sensor protein; Similar to GI|1542971 (percent identity: 40 %/query alignment coverage: 96.0 %/subject alignment coverage: 92.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.443
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.