STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0486UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Similar to GI|3328653 (percent identity: 31 %/query alignment coverage: 83.3 %/subject alignment coverage: 47.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (203 aa)    
Predicted Functional Partners:
XF_0482
Single-stranded DNA binding protein; Similar to SP|P40947 (percent identity: 49 %/query alignment coverage: 111.5 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0483
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0484
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0485
Phage-related protein; Similar to GI|2105134 (percent identity: 34 %/query alignment coverage: 120.4 %/subject alignment coverage: 98.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0480
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the 'phage' integrase family.
       0.714
XF_0481
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.714
XF_0487
Fimbrillin; Similar to GI|1073087 (percent identity: 37 %/query alignment coverage: 91.9 %/subject alignment coverage: 125.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.628
XF_0506
Virulence-associated protein E; Similar to GI|563258 (percent identity: 31 %/query alignment coverage: 86.9 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
 0.581
XF_0513
Phage-related endolysin; Similar to SP|P27359 (percent identity: 46 %/query alignment coverage: 81.8 %/subject alignment coverage: 76.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
 0.581
lpxA
UDP-N-acetylglucosamine acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
 
 0.475
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.