STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0487Fimbrillin; Similar to GI|1073087 (percent identity: 37 %/query alignment coverage: 91.9 %/subject alignment coverage: 125.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (185 aa)    
Predicted Functional Partners:
XF_0486
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Similar to GI|3328653 (percent identity: 31 %/query alignment coverage: 83.3 %/subject alignment coverage: 47.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.615
XF_0482
Single-stranded DNA binding protein; Similar to SP|P40947 (percent identity: 49 %/query alignment coverage: 111.5 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.566
XF_0483
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.566
XF_0484
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.566
XF_0485
Phage-related protein; Similar to GI|2105134 (percent identity: 34 %/query alignment coverage: 120.4 %/subject alignment coverage: 98.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.566
XF_0373
Fimbrial assembly protein; Similar to SP|P34750 (percent identity: 34 %/query alignment coverage: 92.5 %/subject alignment coverage: 82.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 39.
 
   
 0.540
XF_0480
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the 'phage' integrase family.
       0.526
XF_0481
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.526
XF_0488
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.513
XF_0372
Fimbrial assembly protein; Similar to GI|530859 (percent identity: 38 %/query alignment coverage: 98.3 %/subject alignment coverage: 99.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.509
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.