STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0499Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (176 aa)    
Predicted Functional Partners:
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.910
XF_0500
Phage-related repressor protein; Similar to SP|P76062 (percent identity: 50 %/query alignment coverage: 80.4 %/subject alignment coverage: 72.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
0.658
XF_0501
Conserved hypothetical protein; Similar to SP|P76063 (percent identity: 59 %/query alignment coverage: 82.7 %/subject alignment coverage: 87.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.484
XF_0498
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.477
XF_1796
Similar to SP|P06709 (percent identity: 40 %/query alignment coverage: 95.9 %/subject alignment coverage: 94.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
 0.462
recN
Recombination protein N; May be involved in recombinational repair of damaged DNA.
   
  
 0.434
XF_0502
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.424
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.