STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0599TonB-dependent receptor for iron transport; Similar to SP|P75780 (percent identity: 47 %/query alignment coverage: 96.3 %/subject alignment coverage: 98.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (776 aa)    
Predicted Functional Partners:
XF_0598
Conserved hypothetical protein; Similar to GI|2981041 (percent identity: 51 %/query alignment coverage: 99.6 %/subject alignment coverage: 101.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.978
XF_0597
Conserved hypothetical protein; Similar to GI|6459570 (percent identity: 30 %/query alignment coverage: 96.8 %/subject alignment coverage: 102.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.739
XF_0339
Conserved hypothetical protein; Similar to SP|P06129 (percent identity: 35 %/query alignment coverage: 19.4 %/subject alignment coverage: 29.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.725
XF_2713
Conserved hypothetical protein; Similar to GI|3661500 (percent identity: 26 %/query alignment coverage: 29.7 %/subject alignment coverage: 38.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.683
XF_0596
Conserved hypothetical protein; Similar to GI|6459571 (percent identity: 33 %/query alignment coverage: 69.0 %/subject alignment coverage: 61.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.677
XF_0595
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.650
XF_1036
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
  
 0.631
XF_0594
Thiamine biosynthesis lipoprotein ApbE precursor; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
     0.476
XF_2237
Conserved hypothetical protein; Similar to GI|2529416 (percent identity: 26 %/query alignment coverage: 105.0 %/subject alignment coverage: 103.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.471
XF_2134
Ferric enterobactin receptor; Similar to GI|538279 (percent identity: 22 %/query alignment coverage: 85.9 %/subject alignment coverage: 92.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.430
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.