STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6 dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (346 aa)    
Predicted Functional Partners:
XF_0610
UDP-glucose 4-epimerase; Similar to SP|Q45291 (percent identity: 27 %/query alignment coverage: 93.9 %/subject alignment coverage: 84.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 87.
 
0.984
XF_2367
GumD protein; Similar to GI|2120726 (percent identity: 73 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.981
XF_0259
Phosphomannose isomerase-GDP-mannose pyrophosphorylase; Similar to SP|P29956 (percent identity: 84 %/query alignment coverage: 96.9 %/subject alignment coverage: 100.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.972
XF_0611
dTDP-glucose 4-6-dehydratase; Similar to GI|1653195 (percent identity: 63 %/query alignment coverage: 94.8 %/subject alignment coverage: 95.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -66.
  
 
0.740
XF_2433
Epimerase/dehydratase protein; Similar to SP|P39853 (percent identity: 37 %/query alignment coverage: 88.5 %/subject alignment coverage: 93.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.715
XF_0607
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.697
XF_0608
Mannosyltransferase; Similar to GI|2125945 (percent identity: 38 %/query alignment coverage: 95.9 %/subject alignment coverage: 99.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.677
XF_0612
Dolichol-phosphate mannosyltransferase; Similar to GI|2984166 (percent identity: 24 %/query alignment coverage: 94.3 %/subject alignment coverage: 92.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.610
XF_0606
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.536
XF_2568
ABC transporter ATP-binding protein; Similar to SP|Q56903 (percent identity: 45 %/query alignment coverage: 93.9 %/subject alignment coverage: 96.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.475
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.